diff --git a/scripts/refresh-submodules.sh b/scripts/refresh-submodules.sh
index 36dce2b9e0..3147379294 100755
--- a/scripts/refresh-submodules.sh
+++ b/scripts/refresh-submodules.sh
@@ -26,8 +26,8 @@ set -euo pipefail
 
 submodules=(
     seastar
-    scylla-jmx
-    scylla-tools
+    tools/jmx
+    tools/java
 )
 
 for submodule in "${submodules[@]}"; do