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scylladb/utils/estimated_histogram.hh
Amnon Heiman 1e3cfe7396 estimated_histogram: returns a metrics histogram
The metrics histogram is a struct that describe a histogram.
This patch adds a getter method that lets the estimated_histogram return
a metrics::histogram, this will allow to register it as a histogram
metrics.

Signed-off-by: Amnon Heiman <amnon@scylladb.com>
2017-02-06 17:34:43 +02:00

477 lines
14 KiB
C++

/*
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
/*
* Copyright (C) 2015 ScyllaDB
*
* Modified by ScyllaDB
*/
/*
* This file is part of Scylla.
*
* Scylla is free software: you can redistribute it and/or modify
* it under the terms of the GNU Affero General Public License as published by
* the Free Software Foundation, either version 3 of the License, or
* (at your option) any later version.
*
* Scylla is distributed in the hope that it will be useful,
* but WITHOUT ANY WARRANTY; without even the implied warranty of
* MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
* GNU General Public License for more details.
*
* You should have received a copy of the GNU General Public License
* along with Scylla. If not, see <http://www.gnu.org/licenses/>.
*/
#pragma once
#include <cmath>
#include <algorithm>
#include <vector>
#include <chrono>
#include "core/metrics_types.hh"
namespace utils {
struct estimated_histogram {
using clock = std::chrono::steady_clock;
using duration = clock::duration;
/**
* The series of values to which the counts in `buckets` correspond:
* 1, 2, 3, 4, 5, 6, 7, 8, 10, 12, 14, 17, 20, etc.
* Thus, a `buckets` of [0, 0, 1, 10] would mean we had seen one value of 3 and 10 values of 4.
*
* The series starts at 1 and grows by 1.2 each time (rounding and removing duplicates). It goes from 1
* to around 36M by default (creating 90+1 buckets), which will give us timing resolution from microseconds to
* 36 seconds, with less precision as the numbers get larger.
*
* Each bucket represents values from (previous bucket offset, current offset].
*/
std::vector<int64_t> bucket_offsets;
// buckets is one element longer than bucketOffsets -- the last element is values greater than the last offset
std::vector<int64_t> buckets;
int64_t _count = 0;
estimated_histogram(int bucket_count = 90) {
new_offsets(bucket_count);
buckets.resize(bucket_offsets.size() + 1, 0);
}
seastar::metrics::histogram get_histogram() const {
seastar::metrics::histogram res;
res.buckets.resize(bucket_offsets.size());
for (size_t i = 0; i < bucket_offsets.size(); i++ ) {
res.buckets[i].count = buckets[i];
res.buckets[i].upper_bound = bucket_offsets[i];
}
res.sample_count = _count;
return res;
}
// FIXME: convert Java code below.
#if 0
public EstimatedHistogram(long[] offsets, long[] bucketData)
{
assert bucketData.length == offsets.length +1;
bucketOffsets = offsets;
buckets = new AtomicLongArray(bucketData);
}
#endif
private:
void new_offsets(int size) {
bucket_offsets.resize(size);
if (size == 0) {
return;
}
int64_t last = 1;
bucket_offsets[0] = last;
for (int i = 1; i < size; i++) {
int64_t next = round(last * 1.2);
if (next == last) {
next++;
}
bucket_offsets[i] = next;
last = next;
}
}
public:
/**
* @return the histogram values corresponding to each bucket index
*/
const std::vector<int64_t>& get_bucket_offsets() const {
return bucket_offsets;
}
/**
* @return the histogram buckets
*/
const std::vector<int64_t>& get_buckets() const {
return buckets;
}
void clear() {
buckets.resize(buckets.size(), 0);
}
/**
* Increments the count of the bucket closest to n, rounding UP.
* @param n
*/
void add(int64_t n) {
auto low = std::lower_bound(bucket_offsets.begin(), bucket_offsets.end(), n);
if (low == bucket_offsets.end()) {
low--;
}
auto pos = std::distance(bucket_offsets.begin(), low);
buckets.at(pos)++;
_count++;
}
/**
* Increments the count of the bucket closest to n, rounding UP.
* when using sampling, the number of items in the bucket will
* be increase so that the overall number of items will be equal
* to the new count
* @param n
*/
void add_nano(int64_t n, int64_t new_count) {
n /= 1000;
if (new_count <= _count) {
return;
}
auto low = std::lower_bound(bucket_offsets.begin(), bucket_offsets.end(), n);
if (low == bucket_offsets.end()) {
low--;
}
auto pos = std::distance(bucket_offsets.begin(), low);
buckets.at(pos)+= new_count - _count;
_count = new_count;
}
void add(duration latency, int64_t new_count) {
add_nano(std::chrono::duration_cast<std::chrono::nanoseconds>(latency).count(), new_count);
}
/**
* @return the smallest value that could have been added to this histogram
*/
int64_t min() const {
size_t i = 0;
for (auto b : buckets) {
if (b > 0) {
return i == 0 ? 0 : 1 + bucket_offsets[i - 1];
}
i++;
}
return 0;
}
/**
* @return the largest value that could have been added to this histogram. If the histogram
* overflowed, returns INT64_MAX.
*/
int64_t max() const {
int lastBucket = buckets.size() - 1;
if (buckets[lastBucket] > 0) {
return INT64_MAX;
}
for (int i = lastBucket - 1; i >= 0; i--) {
if (buckets[i] > 0) {
return bucket_offsets[i];
}
}
return 0;
}
/**
* merge a histogram to the current one.
*/
estimated_histogram& merge(const estimated_histogram& b) {
if (bucket_offsets.size() < b.bucket_offsets.size()) {
new_offsets(b.bucket_offsets.size());
buckets.resize(b.bucket_offsets.size() + 1, 0);
}
size_t i = 0;
for (auto p: b.buckets) {
buckets[i++] += p;
}
return *this;
}
friend estimated_histogram merge(estimated_histogram a, const estimated_histogram& b);
// FIXME: convert Java code below.
#if 0
/**
* @return the count in the given bucket
*/
long get(int bucket)
{
return buckets.get(bucket);
}
/**
* @param reset zero out buckets afterwards if true
* @return a long[] containing the current histogram buckets
*/
public long[] getBuckets(boolean reset)
{
final int len = buckets.length();
long[] rv = new long[len];
if (reset)
for (int i = 0; i < len; i++)
rv[i] = buckets.getAndSet(i, 0L);
else
for (int i = 0; i < len; i++)
rv[i] = buckets.get(i);
return rv;
}
/**
* @return the smallest value that could have been added to this histogram
*/
public long min()
{
for (int i = 0; i < buckets.length(); i++)
{
if (buckets.get(i) > 0)
return i == 0 ? 0 : 1 + bucketOffsets[i - 1];
}
return 0;
}
/**
* @return the largest value that could have been added to this histogram. If the histogram
* overflowed, returns Long.MAX_VALUE.
*/
public long max()
{
int lastBucket = buckets.length() - 1;
if (buckets.get(lastBucket) > 0)
return Long.MAX_VALUE;
for (int i = lastBucket - 1; i >= 0; i--)
{
if (buckets.get(i) > 0)
return bucketOffsets[i];
}
return 0;
}
/**
* @param percentile
* @return estimated value at given percentile
*/
public long percentile(double percentile)
{
assert percentile >= 0 && percentile <= 1.0;
int lastBucket = buckets.length() - 1;
if (buckets.get(lastBucket) > 0)
throw new IllegalStateException("Unable to compute when histogram overflowed");
long pcount = (long) Math.floor(count() * percentile);
if (pcount == 0)
return 0;
long elements = 0;
for (int i = 0; i < lastBucket; i++)
{
elements += buckets.get(i);
if (elements >= pcount)
return bucketOffsets[i];
}
return 0;
}
#endif
/**
* @return the mean histogram value (average of bucket offsets, weighted by count)
*/
int64_t mean() const {
auto lastBucket = buckets.size() - 1;
int64_t elements = 0;
int64_t sum = 0;
for (size_t i = 0; i < lastBucket; i++) {
long bCount = buckets[i];
elements += bCount;
sum += bCount * bucket_offsets[i];
}
return ((double) (sum + elements -1)/ elements);
}
/**
* @return the total number of non-zero values
*/
int64_t count() const {
int64_t sum = 0L;
for (size_t i = 0; i < buckets.size(); i++) {
sum += buckets[i];
}
return sum;
}
#if 0
/**
* @return true if this histogram has overflowed -- that is, a value larger than our largest bucket could bound was added
*/
public boolean isOverflowed()
{
return buckets.get(buckets.length() - 1) > 0;
}
/**
* log.debug() every record in the histogram
*
* @param log
*/
public void log(Logger log)
{
// only print overflow if there is any
int nameCount;
if (buckets.get(buckets.length() - 1) == 0)
nameCount = buckets.length() - 1;
else
nameCount = buckets.length();
String[] names = new String[nameCount];
int maxNameLength = 0;
for (int i = 0; i < nameCount; i++)
{
names[i] = nameOfRange(bucketOffsets, i);
maxNameLength = Math.max(maxNameLength, names[i].length());
}
// emit log records
String formatstr = "%" + maxNameLength + "s: %d";
for (int i = 0; i < nameCount; i++)
{
long count = buckets.get(i);
// sort-of-hack to not print empty ranges at the start that are only used to demarcate the
// first populated range. for code clarity we don't omit this record from the maxNameLength
// calculation, and accept the unnecessary whitespace prefixes that will occasionally occur
if (i == 0 && count == 0)
continue;
log.debug(String.format(formatstr, names[i], count));
}
}
private static String nameOfRange(long[] bucketOffsets, int index)
{
StringBuilder sb = new StringBuilder();
appendRange(sb, bucketOffsets, index);
return sb.toString();
}
private static void appendRange(StringBuilder sb, long[] bucketOffsets, int index)
{
sb.append("[");
if (index == 0)
if (bucketOffsets[0] > 0)
// by original definition, this histogram is for values greater than zero only;
// if values of 0 or less are required, an entry of lb-1 must be inserted at the start
sb.append("1");
else
sb.append("-Inf");
else
sb.append(bucketOffsets[index - 1] + 1);
sb.append("..");
if (index == bucketOffsets.length)
sb.append("Inf");
else
sb.append(bucketOffsets[index]);
sb.append("]");
}
@Override
public boolean equals(Object o)
{
if (this == o)
return true;
if (!(o instanceof EstimatedHistogram))
return false;
EstimatedHistogram that = (EstimatedHistogram) o;
return Arrays.equals(getBucketOffsets(), that.getBucketOffsets()) &&
Arrays.equals(getBuckets(false), that.getBuckets(false));
}
@Override
public int hashCode()
{
return Objects.hashCode(getBucketOffsets(), getBuckets(false));
}
public static class EstimatedHistogramSerializer implements ISerializer<EstimatedHistogram>
{
public void serialize(EstimatedHistogram eh, DataOutputPlus out) throws IOException
{
long[] offsets = eh.getBucketOffsets();
long[] buckets = eh.getBuckets(false);
out.writeInt(buckets.length);
for (int i = 0; i < buckets.length; i++)
{
out.writeLong(offsets[i == 0 ? 0 : i - 1]);
out.writeLong(buckets[i]);
}
}
public EstimatedHistogram deserialize(DataInput in) throws IOException
{
int size = in.readInt();
long[] offsets = new long[size - 1];
long[] buckets = new long[size];
for (int i = 0; i < size; i++) {
offsets[i == 0 ? 0 : i - 1] = in.readLong();
buckets[i] = in.readLong();
}
return new EstimatedHistogram(offsets, buckets);
}
public long serializedSize(EstimatedHistogram eh, TypeSizes typeSizes)
{
int size = 0;
long[] offsets = eh.getBucketOffsets();
long[] buckets = eh.getBuckets(false);
size += typeSizes.sizeof(buckets.length);
for (int i = 0; i < buckets.length; i++)
{
size += typeSizes.sizeof(offsets[i == 0 ? 0 : i - 1]);
size += typeSizes.sizeof(buckets[i]);
}
return size;
}
}
#endif
};
inline estimated_histogram estimated_histogram_merge(estimated_histogram a, const estimated_histogram& b) {
return a.merge(b);
}
}