Files
seaweedfs/weed/storage/volume_checking.go
Chris Lu 2f0643e5b1 fix(volume): stop flipping volumes read-only on a non-append-ordered .idx (#9726)
* fix(volume): verify the .dat-tail needle in the integrity check

CheckVolumeDataIntegrity checked the last entry by file position in the .idx
and, for a live needle, flipped the volume read-only when fileSize > fileTailOffset.
That entry is the .dat tail only when the .idx is in append order; a key-sorted
.idx (weed fix and other rebuilds listed entries by key) puts the highest-key
needle last, whose tail sits mid-file, so healthy volumes went read-only on every
load and re-running weed fix only reproduced the sorted index.

Locate the needle at the maximum offset — the one physically last in the .dat —
and verify the .dat ends exactly at it, regardless of .idx ordering. The
append-ordered common case stays O(1) (the last entry's on-disk end matches the
.dat size); only a key-sorted index pays a single linear scan. Deletion
tombstones at the tail are now verified too, instead of skipping the file-size
check.

* fix(command): weed fix rebuilds the .idx in .dat offset order

SaveToIdx wrote entries via AscendingVisit — sorted by key, the .sdx/.ecx shape
— so the rebuilt .idx put the highest-key needle last instead of the .dat-tail
needle, and dropped tombstones whose live needle was gone. Collect the live and
deleted entries, sort by .dat offset, and write them in append order so the .idx
stays a faithful log whose last entry is the real .dat tail.
2026-05-28 18:04:31 -07:00

372 lines
14 KiB
Go

package storage
import (
"fmt"
"io"
"os"
"github.com/seaweedfs/seaweedfs/weed/glog"
"github.com/seaweedfs/seaweedfs/weed/storage/backend"
"github.com/seaweedfs/seaweedfs/weed/storage/idx"
"github.com/seaweedfs/seaweedfs/weed/storage/needle"
"github.com/seaweedfs/seaweedfs/weed/storage/super_block"
"github.com/seaweedfs/seaweedfs/weed/storage/types"
"github.com/seaweedfs/seaweedfs/weed/util"
)
// openIndex returns a file descriptor for the volume's index, and the index size in bytes.
func (v *Volume) openIndex() (*os.File, int64, error) {
idxFileName := v.FileName(".idx")
idxFile, err := os.OpenFile(idxFileName, os.O_RDONLY, 0644)
if err != nil {
return nil, 0, fmt.Errorf("failed to open IDX file %s for volume %v: %v", idxFileName, v.Id, err)
}
idxStat, err := idxFile.Stat()
if err != nil {
idxFile.Close()
return nil, 0, fmt.Errorf("failed to stat IDX file %s for volume %v: %v", idxFileName, v.Id, err)
}
if idxStat.Size() == 0 {
if v.DataBackend == nil {
idxFile.Close()
return nil, 0, fmt.Errorf("volume %v has no data backend", v.Id)
}
volumeFileSize, _, err := v.DataBackend.GetStat()
if err != nil {
idxFile.Close()
return nil, 0, fmt.Errorf("failed to stat storage for zero-size IDX volume %v: %w", v.Id, err)
}
// account for pre-allocated volumes (f.ex. after running "volume.grow") without data, as these
// are allowed to have zero-size indices.
if volumeFileSize > int64(super_block.SuperBlockSize) {
idxFile.Close()
return nil, 0, fmt.Errorf("zero-size IDX file for volume %v with store size %d", v.Id, volumeFileSize)
}
}
return idxFile, idxStat.Size(), nil
}
// ScrubIndex checks the volume's index for issues.
func (v *Volume) ScrubIndex() (int64, []error) {
v.dataFileAccessLock.RLock()
defer v.dataFileAccessLock.RUnlock()
idxFile, idxFileSize, err := v.openIndex()
if err != nil {
return 0, []error{err}
}
defer idxFile.Close()
return idx.CheckIndexFile(idxFile, idxFileSize, v.Version())
}
// scrubVolumeData checks a volume content + index for issues.
func (v *Volume) scrubVolumeData(idxFile *os.File, idxFileSize int64) (int64, []error) {
if v.DataBackend == nil {
return 0, []error{fmt.Errorf("volume %d has no data backend", v.Id)}
}
// full scrubbing means also scrubbing the index
var count int64
_, errs := idx.CheckIndexFile(idxFile, idxFileSize, v.Version())
// read and check every indexed needle
var totalRead int64
version := v.Version()
err := idx.WalkIndexFile(idxFile, 0, func(id types.NeedleId, offset types.Offset, size types.Size) error {
count++
// compute the actual size of the needle in disk, including needle header, body and alignment padding.
actualSize := int64(needle.GetActualSize(size, version))
// TODO: Needle.ReadData() is currently broken for deleted files, which have a types.Size < 0. Fix
// so deleted needles get properly scrubbed as well.
// TODO: idx.WalkIndexFile() returns a size -1 (and actual size of 32 bytes) for deleted needles. We
// want to scrub deleted needles whenever possible.
if size.IsDeleted() {
totalRead += actualSize
return nil
}
n := needle.Needle{}
if err := n.ReadData(v.DataBackend, offset.ToActualOffset(), size, version); err != nil {
errs = append(errs, fmt.Errorf("failed to read needle %d on volume %d: %v", id, v.Id, err))
}
totalRead += actualSize
return nil
})
if err != nil {
errs = append(errs, err)
}
// check total volume file size
wantSize := totalRead + super_block.SuperBlockSize
dataSize, _, err := v.DataBackend.GetStat()
if err != nil {
errs = append(errs, fmt.Errorf("failed to stat data file for volume %d: %v", v.Id, err))
} else {
if dataSize < wantSize {
errs = append(errs, fmt.Errorf("data file for volume %d is smaller (%d) than the %d needles it contains (%d)", v.Id, dataSize, count, wantSize))
} else if dataSize != wantSize {
errs = append(errs, fmt.Errorf("data file size for volume %d (%d) doesn't match the size for %d needles read (%d)", v.Id, dataSize, count, wantSize))
}
}
return count, errs
}
// Scrub checks the entire volume content for issues.
func (v *Volume) Scrub() (int64, []error) {
v.dataFileAccessLock.RLock()
defer v.dataFileAccessLock.RUnlock()
idxFile, idxFileSize, err := v.openIndex()
if err != nil {
return 0, []error{err}
}
defer idxFile.Close()
return v.scrubVolumeData(idxFile, idxFileSize)
}
func CheckVolumeDataIntegrity(v *Volume, indexFile *os.File) (lastAppendAtNs uint64, err error) {
var indexSize int64
if indexSize, err = verifyIndexFileIntegrity(indexFile); err != nil {
return 0, fmt.Errorf("verifyIndexFileIntegrity %s failed: %v", indexFile.Name(), err)
}
if indexSize == 0 {
return 0, nil
}
// The deeper-than-tail structural check (every (offset + actual size)
// fits inside .dat — issue #8928) lives in volume.load(): it reads
// MaximumNeedleEnd from the needle map after the load walk, so we don't
// need a redundant linear scan of the .idx here.
// Verify the needle physically last in the .dat (the highest offset) and
// that the .dat ends exactly at it. The .idx is not always in .dat append
// order: weed fix and other rebuilds could rewrite it sorted by key, which
// puts the highest-key needle last instead of the .dat-tail needle. Picking
// the last file-position entry there compares a mid-file needle's tail
// against the full .dat size and falsely flips the volume read-only on every
// load (issue #9688).
tailEntryPos, err := findDatTailEntryOffset(v, indexFile, indexSize)
if err != nil {
return 0, fmt.Errorf("CheckVolumeDataIntegrity %s: %v", indexFile.Name(), err)
}
if tailEntryPos < 0 {
// pre-allocated / all-zero index, nothing to verify against the .dat
return 0, nil
}
if lastAppendAtNs, err = doCheckAndFixVolumeData(v, indexFile, tailEntryPos); err != nil {
return lastAppendAtNs, fmt.Errorf("CheckVolumeDataIntegrity %s failed: %v", indexFile.Name(), err)
}
return lastAppendAtNs, nil
}
// findDatTailEntryOffset returns the .idx file position of the entry whose
// needle is physically last in the .dat (highest offset). The common case — an
// append-ordered .idx — is resolved in O(1): the last entry's on-disk end
// equals the .dat size. A key-sorted .idx (e.g. legacy weed fix output) falls
// back to a single linear scan for the maximum offset. Returns -1 when no entry
// has a non-zero offset (a pre-allocated / all-zero index).
func findDatTailEntryOffset(v *Volume, indexFile *os.File, indexSize int64) (int64, error) {
// Fast path: an append-ordered .idx ends with the .dat-tail needle, so the
// last entry's on-disk end matches the .dat size.
if v.DataBackend != nil {
if datSize, _, statErr := v.DataBackend.GetStat(); statErr == nil && datSize > 0 {
lastPos := indexSize - types.NeedleMapEntrySize
entryBytes, err := readIndexEntryAtOffset(indexFile, lastPos)
if err != nil {
return 0, fmt.Errorf("read last index entry: %v", err)
}
_, offset, size := idx.IdxFileEntry(entryBytes)
if !offset.IsZero() && needleDiskEnd(offset, size, v.Version()) == datSize {
return lastPos, nil
}
}
}
// Slow path: scan the whole .idx for the entry at the maximum offset.
maxEntryPos := int64(-1)
maxActualOffset := int64(-1)
entryPos := int64(0)
if err := idx.WalkIndexFile(indexFile, 0, func(_ types.NeedleId, offset types.Offset, _ types.Size) error {
if !offset.IsZero() {
if ao := offset.ToActualOffset(); ao > maxActualOffset {
maxActualOffset = ao
maxEntryPos = entryPos
}
}
entryPos += types.NeedleMapEntrySize
return nil
}); err != nil {
return 0, fmt.Errorf("scan index: %v", err)
}
return maxEntryPos, nil
}
// needleDiskEnd returns the byte offset just past the needle's on-disk record.
// Deletion tombstones carry TombstoneFileSize (-1) in the .idx but are written
// with DataSize=0, so their on-disk record is sized as 0.
func needleDiskEnd(offset types.Offset, size types.Size, version needle.Version) int64 {
onDiskSize := size
if size.IsDeleted() {
onDiskSize = 0
}
return offset.ToActualOffset() + needle.GetActualSize(onDiskSize, version)
}
func doCheckAndFixVolumeData(v *Volume, indexFile *os.File, indexOffset int64) (lastAppendAtNs uint64, err error) {
var lastIdxEntry []byte
if lastIdxEntry, err = readIndexEntryAtOffset(indexFile, indexOffset); err != nil {
return 0, fmt.Errorf("readLastIndexEntry %s failed: %v", indexFile.Name(), err)
}
key, offset, size := idx.IdxFileEntry(lastIdxEntry)
if offset.IsZero() {
return 0, nil
}
if size < 0 {
// Deletion tombstone: the .idx carries TombstoneFileSize (-1) but the
// appended needle in .dat carries Size=0. verifyDeletedNeedleIntegrity
// reads it with Size=0 (the size check / 32GB wrap-around retry would
// otherwise read past EOF) and still verifies the .dat ends at it.
if lastAppendAtNs, err = verifyDeletedNeedleIntegrity(v.DataBackend, v.Version(), offset.ToActualOffset(), key); err != nil {
if err == io.EOF || err == ErrorSizeMismatch {
return lastAppendAtNs, err
}
return lastAppendAtNs, fmt.Errorf("verifyDeletedNeedleIntegrity %s failed: %v", indexFile.Name(), err)
}
} else {
if lastAppendAtNs, err = verifyNeedleIntegrity(v.DataBackend, v.Version(), offset.ToActualOffset(), key, size); err != nil {
if err == ErrorSizeMismatch {
return verifyNeedleIntegrity(v.DataBackend, v.Version(), offset.ToActualOffset()+int64(types.MaxPossibleVolumeSize), key, size)
}
return lastAppendAtNs, err
}
}
return lastAppendAtNs, nil
}
func verifyIndexFileIntegrity(indexFile *os.File) (indexSize int64, err error) {
if indexSize, err = util.GetFileSize(indexFile); err == nil {
if indexSize%types.NeedleMapEntrySize != 0 {
err = fmt.Errorf("index file's size is %d bytes, maybe corrupted", indexSize)
}
}
return
}
func readIndexEntryAtOffset(indexFile *os.File, offset int64) (bytes []byte, err error) {
if offset < 0 {
err = fmt.Errorf("offset %d for index file is invalid", offset)
return
}
bytes = make([]byte, types.NeedleMapEntrySize)
var readCount int
readCount, err = indexFile.ReadAt(bytes, offset)
if err == io.EOF && readCount == types.NeedleMapEntrySize {
err = nil
}
return
}
func verifyNeedleIntegrity(datFile backend.BackendStorageFile, v needle.Version, offset int64, key types.NeedleId, size types.Size) (lastAppendAtNs uint64, err error) {
n, _, _, err := needle.ReadNeedleHeader(datFile, v, offset)
if err == io.EOF {
return 0, err
}
if err != nil {
return 0, fmt.Errorf("read %s at %d", datFile.Name(), offset)
}
if n.Size != size {
return 0, ErrorSizeMismatch
}
if v == needle.Version3 {
bytes := make([]byte, types.TimestampSize)
var readCount int
readCount, err = datFile.ReadAt(bytes, offset+types.NeedleHeaderSize+int64(size)+needle.NeedleChecksumSize)
if err == io.EOF && readCount == types.TimestampSize {
err = nil
}
if err == io.EOF {
return 0, err
}
if err != nil {
return 0, fmt.Errorf("verifyNeedleIntegrity check %s entry offset %d size %d: %v", datFile.Name(), offset, size, err)
}
n.AppendAtNs = util.BytesToUint64(bytes)
fileTailOffset := offset + needle.GetActualSize(size, v)
fileSize, _, err := datFile.GetStat()
if err != nil {
return 0, fmt.Errorf("stat file %s: %v", datFile.Name(), err)
}
if fileSize == fileTailOffset {
return n.AppendAtNs, nil
}
if fileSize > fileTailOffset {
glog.Warningf("data file %s actual %d bytes expected %d bytes!", datFile.Name(), fileSize, fileTailOffset)
return n.AppendAtNs, fmt.Errorf("data file %s actual %d bytes expected %d bytes", datFile.Name(), fileSize, fileTailOffset)
}
glog.Warningf("data file %s has %d bytes, less than expected %d bytes!", datFile.Name(), fileSize, fileTailOffset)
}
if err = n.ReadData(datFile, offset, size, v); err != nil {
return n.AppendAtNs, fmt.Errorf("read data [%d,%d) : %v", offset, offset+int64(size), err)
}
if n.Id != key {
return n.AppendAtNs, fmt.Errorf("index key %v does not match needle's Id %v", key, n.Id)
}
return n.AppendAtNs, err
}
func verifyDeletedNeedleIntegrity(datFile backend.BackendStorageFile, v needle.Version, offset int64, key types.NeedleId) (lastAppendAtNs uint64, err error) {
n := new(needle.Needle)
// Tombstones are appended with DataSize=0, so the on-disk header carries
// Size=0. TombstoneFileSize (-1) lives only in the .idx; passing it to
// ReadData fails the size check and triggers the 32GB wrap-around retry,
// which reads past EOF and falsely marks the volume read-only.
size := types.Size(0)
if err = n.ReadData(datFile, offset, size, v); err != nil {
// A truncated tail surfaces here as io.EOF; pass it (and a size mismatch)
// through so the volume is marked read-only.
if err == io.EOF || err == ErrorSizeMismatch {
return n.AppendAtNs, err
}
return n.AppendAtNs, fmt.Errorf("read data [%d,%d) : %v", offset, offset+needle.GetActualSize(size, v), err)
}
if n.Id != key {
return n.AppendAtNs, fmt.Errorf("index key %v does not match needle's Id %v", key, n.Id)
}
// This tombstone is the needle at the .dat tail (the highest offset), so the
// .dat must end exactly at it; extra bytes mean an unindexed trailing record.
fileSize, _, statErr := datFile.GetStat()
if statErr != nil {
return n.AppendAtNs, fmt.Errorf("stat file %s: %v", datFile.Name(), statErr)
}
if fileTailOffset := offset + needle.GetActualSize(size, v); fileSize > fileTailOffset {
glog.Warningf("data file %s actual %d bytes expected %d bytes!", datFile.Name(), fileSize, fileTailOffset)
return n.AppendAtNs, fmt.Errorf("data file %s actual %d bytes expected %d bytes", datFile.Name(), fileSize, fileTailOffset)
}
return n.AppendAtNs, nil
}
func (v *Volume) checkIdxFile() error {
datFileSize, _, err := v.DataBackend.GetStat()
if err != nil {
return fmt.Errorf("get stat %s: %v", v.FileName(".dat"), err)
}
if datFileSize <= super_block.SuperBlockSize {
return nil
}
indexFileName := v.FileName(".idx")
if util.FileExists(indexFileName) {
return nil
}
return fmt.Errorf("idx file %s does not exists", indexFileName)
}